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Target Engagement Assays for PARP and DDR Pathway Targets

The DNA Damage Response (DDR) pathway is critical in maintaining genomic stability and preventing the propagation of damaged DNA through cell division. Dysfunction in the DDR pathway is frequently observed in cancer, and components of this pathway have been targeted for anti-cancer therapeutics. One such component is PARP1, a member of the Poly (ADP ribose) Polymerase (PARP) family that mediates a number of cellular processes, including DNA repair.

Here you can find target engagement assays against members of the PARP family and select targets in the DDR pathway, such as PARG and POLQ. These assays can be used to characterize compound-target interactions in live cells.

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DDR Pathway Basics

The DNA Damage Response (DDR) pathway maintains genomic integrity by detecting and repairing DNA damage. DDR involves a complex network of sensors, transducers and effectors that coordinate to identify DNA lesions and initiate appropriate repair processes. This pathway is essential not only in preserving DNA integrity during replication and in response to environmental stressors but also in ensuring proper cell cycle progression and apoptosis. Dysfunctions in DDR components are frequently observed in cancer cells, where they contribute to genomic instability and uncontrolled cell proliferation.

Given its central role in cell cycle progression and cell proliferation, the DDR pathway has become a significant target for anti-cancer therapeutics. Inhibition of the DDR pathway has the potential to sensitize cancer cells to chemotherapy and radiotherapy, which exert cytotoxicity effects by inducing DNA damage. Additionally, due to defects in the DDR pathway, cancer cells are often dependent on the remaining functional pathways for DNA repair. This dependence has been exploited using the principle of synthetic lethality, which enables selective targeting of the cancer cells while minimizing impacts on normal cells. The approval of PARP inhibitors to treat BRCA-mutant cancers is a prominent example of leveraging synthetic lethality in the development of new anti-cancer therapeutics.

NanoBRET® Target Engagement (TE) Assays provide a way to quantitatively measure specific target-compound interactions in live cells. Furthermore, we've adapted NanoBRET® TE Assays to monitor compound binding to target protein in complex with a partner protein, DNA fragments or metabolites, providing additional insights into target engagement by inhibitors against the DDR pathway.

NanoBRET® TE Assays for Targets in the DDR Pathway

PARPs/PARG
Polymerase Theta
PRMT5
Kinases

Measure Compound Affinity and Selectivity for PARPs and PARG

Plot of BRET ratio versus PARG inhibitor concentration provides a measure of the compounds' affinity for PARG.
Various PARP inhibitors show a range of selectivity with IC50 values from less than 100nM to 1–10µM.

NanoBRET® TE assays can be used to quantify the affinity of inhibitors against PARG and multiple members of the PARP family in live cells. Left Panel. Affinities of multiple inhibitors against PARG. Right Panel. Selectivity profiling of FDA-approved PARP inhibitors across multiple PARPs; the PARP1 inhibitors showed varying degrees of selectivity. Note: PARPs in gray were not assayed. View Product Page.

Assess Target Engagement at Polymerase-Theta/DNA Complex and Query Domain Selectivity

A.

Graphic representation of how the NanoBRET® TE POLQ Polymerase Domain assay works.

B.

Graphic representation of how the NanoBRET® TE POLQ Polymerase Domain assay works.

Schematic of NanoBRET® TE POLQ Assays. NanoBRET® TE POLQ Polymerase Domain Assay is performed in the presence of a DNA fragment, allowing characterization of compound binding to the polymerase domain of polymerase-theta in a nucleoprotein complex (Panel A). A second POLQ TE assay, which uses a tracer and POLQ fusion vector developed for the helicase domain of polymerase-theta, enables the quantitation of compound affinity against the helicase domain specifically (Panel B). View Product Page.

Detect Multiple Modes of PRMT5 Engagement in Live Cells

Illustration of the two distinct substrate and cofactor binding pockets of PRMT5.
Plot of normalized BRET signal versus concentration of SAM-cooperative inhibitors.

The NanoBRET® TE PRMT5 Assay can be used to measure live-cell engagement of SAM-cooperative inhibitor targeting the peptide-substrate pocket (GSK3326595, red), SAM-competitive inhibitor targeting the co-substrate pocket (LLY283, green), and MTA-cooperative inhibitor targeting the peptide-substrate pocket (MRTX1719, blue). See Product Page for more details.

Measure Affinity and Selectivity of Kinase Inhibitors in Live Cells

Plot of normalized BRET signal versus concentration of GSK461364 in 8 different intracellular kinase assays.
Plot of normalized BRET signal versus concentration of Volasertib in 8 different intracellular kinase assays.

NanoBRET® TE Intracellular Kinase Assays have been developed for >340 kinase targets, including many kinases involved the DDR pathway. The assays can be used to quantify the intracellular affinity of kinase inhibitors against individual kinases or assess inhibitor selectivity among related targets. Shown here is selectivity profiling of PLK inhibitors against a panel of DDR-related kinases; GSK461364 is PLK1-selective, whereas Volasertib exhibits similar affinity against PLK1-3. See Kinase Target Engagement page for more details.

Looking for a literature example of how TE assay is used with kinases in DDR pathway?
Read this publication.

Looking for a list of all kinases with a validated TE assay?
See all available kinases.

Looking to profile selectivity across a more diverse kinase panel?
Go to the K192 Kinase Selectivity System product page.

Want to accelerate your drug discovery workflow? Our Tailored R&D Solutions team offers services using the NanoBRET® TE Assays for targets in the DDR Pathway.

Contact Tailored R&D Solutions Team
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